SE3150117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10714
  • Fragaria vesca
  • SE3150117
  • PIF/harbinger
  • FrvP15
  • LG5:15427876-15428298
  • TAT
  • AGAGCATCTCCAACAGCTTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTT                      CATTTTCT   ACTTCTCAATTTTGGAGAATATAGAGCTGTTTTTAGGTCCAACAGCTTCCCCATCTCATTCTCCAAAATGGGGATGAAGAAGAAAAAGAAGCCTTCATTCCCCAAATTTGCAGCAAAGCCTTTCTTCCCCAAAATTAAATTCTTCACGTGCTCCAACGAATTTAAGACAACAATAAA
                     AGAGCATCTCCAACAGCTTCTC        TGA                                                                                                                                                                                 
                     ||||||||||||||||||||||        |||                                                                                                                                                                                  
                     TCTCGTAGAGGTTGTCGAAGGG        AGA                                                                                                                                                                                 
                   AT                      -ATTTTAA   GATTTTACCCCTTCGTTTTGGATTTTAGAGGTTTTTTTAATACTAGTTTTAGGTCGTCGAAGAGGTAAAATCTCTAAAGCCGTAAATTATGTTGTTATTTTATATTATATAGTAGTAATTAATATTGTTTTTTTGTAATATATAACGTAACATTGTTATTTGATGGGTTATTTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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