SE3160119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10716
  • Fragaria vesca
  • SE3160119
  • Micron
  • FrvMi2
  • LG7:10818768-10819160
  • TATACAC
  • GGAGCCGTTCAGAAGCGGACGTCCACACTGGACTTAAAGTGTGGATGTCCCTCCGTTTTCCACTGTCCAGCGCCGACAACGGCGCTCCTCCACCTGAGCGGACACCAGAGGCATCCCCGATCACTTTCCCTTGCCGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACACACATAC  AG      -    G    C    A      A                                    A                T                   CA                                T    AA  - ---   GGTTTGGGCAGCAACCTTCACCTAAAACT
             GG  CCGTTC AGAA CGGA GTCC CACTGG CTTAAAGTGTGGATGTCCCTCCGTTTTCCACTGTCC GCGCCGACAACGGCGC CCTCCACCTGAGCGGACAC  GAGGCATCCCCGATCACTTTCCCTTGCCGGCG GATC  TT T   GAA                             
             ||  |||||| |||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||  || |   |||                             T
             CC  GGCAAG TCTT GTCT CAGG GTGATC GAATTTCACGTCTGCAGGGAGGCAAGAGGTGGCAGG CGCGGCTGTTGCCGCG GGAGGTGGGCTCGCCTGTG  CTCCGTAGGGGCTAGTGAAAGGGAACGGCCGC CTGA  GC G   ATG                             
 ATATATATATAT  -G      C    -    A    C      C                                    C                C                   -A                                -    --  G TTT   GTCAAACGTCGGCTCTAGCTAGAACAGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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