SE3150120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10717
  • Fragaria vesca
  • SE3150120
  • PIF/harbinger
  • FrvP16
  • LG4:6808909-6809374
  • TAT
  • AGGGCGTGTTTACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTA              AA  A     GGG     GGGTGAATGAGATTTAAGGTGAATAGGAATAAGGGTGAATGGGAGAGAGAAGGAGTCATTCCCATTCCATTGTTTACTTGTCATTTGGAATGAGGCGATCTACAATGGTGTCTGAAATGACGTTCTCTCAGCAAGAGGAGAAAAAGAGATAGATCTGAAATGGTGTTTTAAGTCGTAGGCTTTTGATATGGGTAGTTTAGG
                    AGGGCGTGTTTACT  AC TGAAT   ATTTA                                                                                                                                                                                                         
                    ||||||||||||||  || |||||   |||||                                                                                                                                                                                                          
                    TCCCGCGCAAATGA  TC CACTT   ACCCT                                                                                                                                                                                                         
                  AA              AA  -     ---     TAGTAGGCAAACCCTCAGTAAGGGTAAGGCTCGACTTCACAACAAATGATTGAATTCCTCCTTAGTTTGTACACACCCAGGGTCACAACTTGGGCCTCAGTAAGAGGGAAAAGGTAAGGCCTCCTCCCCCAACCATAACTAAAACTAAGTGGGTACTTAGTCTAAAGTCAAGGTTAAAATTGGAACATTAAAATAGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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