SE3160124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10721
  • Fragaria vesca
  • SE3160124
  • Micron
  • FrvMi3
  • LG7:21385266-21385702
  • TATATAT
  • TATATAGGATTTTTCTCAGCTGCGGACGTACGCACCAATGGTTTTGGTGCGGATTTTCATTTTTGCACCACTTTTCAATCCAATTTCCTCATCTCCACCGTCTAGTATCTAGATAATATTGTGTAGATCATCTCGGCAAAATTTCAGCCAATTTGATAATCGTTAAGGCCCTCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA       GA                    A                                        C     A   C      C                         T                    GG     T             A                    ---CTCGAAAAACAAATG      CTGAATTCTGTCA
  TATATAG  TTTTTCTCAGCTGCGGACGT CGCACCAATGGTTTTGGTGCGGATTTTCATTTTTGCACCA TTTTC ATC AATTTC TCATCTCCACCGTCTAGTATCTAGA AATATTGTGTAGATCATCTC  CAAAA TTCAGCCAATTTG TAATCGTTAAGGCCCTCAAA                  GACGGA             
  |||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||                  ||||||             A
  ATATATC  GGGAAGAGTCGACGCCTGCA GCGTGGTTACCAAAACCACGCCTAAAAGTAAAAACGTGGT AAAAG TAG TTAAAG AGTAGAGGTGGCAGATCATAGATCT TTATAACACATCTAGTAGAG  GTTTT AAGTCGGTTAAAC ATTAGCAATTCCGGGAGTTT                  TTTGTA             
AA       --                    A                                        A     C   C      A                         C                    AA     T             C                    TAACGTAGAAAAACAATA      CTTGCCAAGTACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End