SE3160125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10722
  • Fragaria vesca
  • SE3160125
  • Micron
  • FrvMi2
  • LG4:17225205-17225610
  • TATATAT
  • TATATATATATATCAGTCGGGATCACAGACGGATGTCCGCAAACCCGTAAAAGTGCGGATGTCCCTGCTTTTGCAGCGATCAAGCGCCGACGACGTCCCTTCTCTTGCCGGACGGACACTAGA

Secondary structure and sequence

TSD    TIR
5'



3'
              - A T      -CAC   C      C                                                          T          G           C    GGCA   C  A   GTTTAACATGAAGATGAAGGCCATGGAGATCGGAGTTGAAGGTCTGGGCAGCAACCTCCACCCA
 TATATATATATAT C G CGGGAT    AGA GGATGT CGCAAACCCGTAAAAGTGCGGATGTCCCTGCTTTTGCAGCGATCAAGCGCCGACGACG CCCTTCTCTT CCGGACGGACA TAGA    TCC GG CCT                                                                
 ||||||||||||| | | ||||||    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    ||| || |||                                                                A
 ATATATATATATG G C GTCCTA    TCT CCTGCA GCGTTTGGGCATTTTCACGCCTACAGGGACGAAAACGTCGCTAGTTCGCGGCTGCTGC GGGAAGAGAA GGCCTGCCTGT GTCT    CTA GC CTC                                                                
T             T C T      ATCT   -      A                                                          C          G           A    GGAA   -  A   GAAGGAGAACGGCCGTCTGAGCGGCTTATGGTCAAACGTCGGCTCCAACTACAACAGACTTCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End