Plant MITE

SE3120126

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10723
Fragaria vesca
SE3120126
Mutator
FrvM26
LG5:21256958-21257239
TATAAGAAA
TGAAATTTGTTTAGTCCTTGTGGTTTGAGGTTGACATATGTTTAGTCCTTGTGGTTTTATTTTAATCTGAATAGTCCTTAAGGTCACAATTTTTCATCCAAATGATCATTCCGTCAGT

Secondary structure and sequence

TSD TIR

5'

3'

TATAAGAAAATGAAT      -    T                                                             A                         C     A  ---AT  -       TTTCTCA
               TGAAAT TTGT TAGTCCTTGTGGTTTGAGGTTGACATATGTTTAGTCCTTGTGGTTTTATTTTAATCTGAAT GTCCTTAAGGTCACAATTTTTCATC AAATG TC     TC CGTCAGT       
               |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||     || |||||||       G
               ATTTTA AACA ATTAGGAACACCAAACTTCAGCTGTATACAAATCAGGAACACCAAAATAAAATTAGACTTA CAGGAATTTCAGTGTTAAAAAGTAG TTTAC AG     GG GCAGTCG       
  TTAAAAGAATCCC      C    T                                                             C                         A     C  GATCC  T       TTAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120126

TATAAGAAAATGAATTGAAATTTGTTTAGTCCTTGTGGTTTGAGGTTGACATATGTTTAGTCCTTGTGGTTTTATTTTAATCTGAATAGTCCTTAAGGTCACAATTTTTCATCCAAATGATCATTCCGTCAGTTTTCTCAGTTCAATTGCTGACGTGGCCTAGGACCATTTAGATGAAAAATTGTGACTTTAAGGACCATTCAGATTAAAATAAAACCACAAGGACTAAACATATGTCGACTTCAAACCACAAGGATTATACAACATTTTACCCTAAGAAAATT

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