SE3120129

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10726
  • Fragaria vesca
  • SE3120129
  • Mutator
  • FrvM5
  • LG7:2530150-2530548
  • TATACTCCN
  • AGCTCGAGAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCCNGTCATNCTNNCCAGA    - --           AAATA    A A                              CG                               A  ACT     ATAAACAAA      CTATT      G   TGA     A     A   ----AACAAGTTCAA      G      G    GGGTA    G     AGTT
                        AGCT C  GAGAAATTTTT     CTAC G AGGACCACGTGGCAGTCTGACGTGGTCCTA  TTCCAATCAAATTTAGATATGTGGATTTTTT CA   AAAAT         TATTTT     TTTTGT AAA   CATTT TGGGT TTT               ACTAGG TCTAGG TCTA     TAGG TTTAA    
                        |||| |  |||||||||||     |||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||   |||||         ||||||     |||||| |||   ||||| ||||| |||               |||||| |||||| ||||     |||| |||||    T
                        TCGA G  CTCTTTAAAAA     GATG C TCCTGGTGCACCGTCAGACTGTACTAGGAT  AAGGTTAGTTTAAATCTGTACATCTAAAAGA GT   TTTTA         ATAAAG     AAAACA TTT   GTAAA ATCCA AAG               TGATTT AGATTT GGAT     ATTT GGATT    
                       C    A AC           GTCAC    C C                              AA                               A  GCT     ---------      TCGAT      G   TTG     -     A   ACAACAAAAAAATTA      G      G    ATGGG    G     GGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End