SE3160131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10728
  • Fragaria vesca
  • SE3160131
  • Micron
  • FrvMi7
  • LG7:13960321-13960753
  • TATATAT
  • TATATAAACAGGGCCCTTCCACTAAGGGATCCCTTATTATGACTTATACGAGGGATTGAGCATTAGACTAACTTTTCGATCACATTTTTCAATCTTAACCATTCAGTTTTTAGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA      A                                         C                 A         C      ATT  TCA     A                  CCTAATAT        C   A C   A     T        A     G       GC  AA    -    TTTTC   A         G   GA
  TATATA ACAGGGCCCTTCCACTAAGGGATCCCTTATTATGACTTATA GAGGGATTGAGCATTAG CTAACTTTT GATCAC   TT   ATCTT ACCATTCAGTTTTTAGGT        GTAGATCA TTC G AAA TTTCA CCAAATTG TGATC TTAAGGT  TC  AACT GCAA     ATG ACGGTTTAG ATT  
  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||   ||   ||||| ||||||||||||||||||        |||||||| ||| | ||| ||||| |||||||| ||||| |||||||  ||  |||| ||||     ||| ||||||||| |||   
  ATATAT TGTCCCGGGAAGGTGATTCCCTAGGGAATAGTACTGAATAT CTCCCTAACTCGTAATC GGTTGAAAA CTAGTG   AG   TAGAG TGGTAAGTTGGAGATCCA        CATCTAGT AAG C TTT AAAGT GGTTTAAC ACTAG AATTCCG  AG  TTGA CGTT     TAC TGCCAAGTT TAG  
AA      A                                         A                 G         A      AAT  TTG     G                  TATATACT        A   A C   A     C        C     A       -A  -C    T    -----   C         -   AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End