SE3150134

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10731
  • Fragaria vesca
  • SE3150134
  • PIF/harbinger
  • FrvP14
  • LG6:17261208-17261731
  • TAT
  • AGGGCACGTTTACTAACTTGGAATGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATT      C                 -   AATTATCATAAATC    -------  AATAACAATCGATATCAACAAGAACCGGTATGAGAATATTTCGTACCATTCTACTGTTTACTTACCAAAAGAAATCAAAACATGAATGAAACTAATTACGATTGATGTTGTTTACTTATCATATGGAATCGGAATTAAAACTAGCTAGTTTGATTACTAAAATACCCCTACAATAAATGAATTTAAAATACCCCTAAAATATAATATATATTTTT
    AGGGCA GTTTACTAACTTGGAAT GAA              GATA       TC                                                                                                                                                                                                                       
    |||||| ||||||||||||||||| |||              ||||       ||                                                                                                                                                                                                                        
    TCCCGT CAAATGATTGGATCTTA CTT              CTCT       TT                                                                                                                                                                                                                       
  AT      A                 T   ------------AA    CACCACA  AACTAAGGCCTTACCCACTTAAGATCGCAAATGATTGTACAGTTCCATAACCTTACTTACACCCAGGGTGAACGAATAGTCCTTAGCTAAGAACTGCTTTGGGGAATAAGCTATGGGTTCTCCCCTCTACCCATAGTCTTAGTTCCATTACCTTAGTTGAAAAAGAGGGTTTTTATAAAAGTGTACTAATATTATAAAGATTTAATGGGTTGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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