SE3120136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10733
  • Fragaria vesca
  • SE3120136
  • Mutator
  • FrvM34
  • LG2:2171335-2172051
  • TAATGTGTT
  • TGGGTGTTGCTAGATGTACCCAGCAAACTTCTTAATAGACCCAGCAATTAAAAATTATCCTGTATTTTCTAGTTTTGCCCTTGTTATAATAAACCCAGCAAACATTATCTCT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATGTGTT                             T    A                                                            C         ----   -    AACACCAC    A  C    AAGAGAACTAAT    ----  -   GAAATCAAGAGGAGCTTTCCCATGATCTAAGTGTAGAATCTTGAGAAGATTTGATGTACGGGATATCGGAACCGATTGCCTTAAAAAAAAAAATTCCAATTCAATGATCATCCCATTACATATATCTCACCCATATCAATACAGGTATGGAACTTCGATCATCTTAAAACATATAATTGTAGAATATATTTCAGGTAATGG
         TGGGTGTTGCTAGATGTACCCAGCAAACT CTTA TAGACCCAGCAATTAAAAATTATCCTGTATTTTCTAGTTTTGCCCTTGTTATAATAAACC AGCAAACAT    TAT CTCT        GTTG GA CAGA            ATGG    GG GAG                                                                                                                                                                                                         
         ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||| ||||        |||| || ||||            ||||    || |||                                                                                                                                                                                                         A
         ACCCACAACGATTTACATGGGTCGTTTGA GAAT ATCTGGGTCGTTAATTTTTAATAGGACATAAAAGGTCAAAACGGGAACAATATTATTTGG TCGTTTGTG    ATA GAGA        CAGC CT GTCT            CCGT    TA TTC                                                                                                                                                                                                         
  TTTGTGT                             T    C                                                            A         TTTA   A    ----ATCT    -  A    ------------    AATT  A   TTCTTCTCTACACCGTTGCTGACGCGTTTGTGTTGTAGGATAAATCCTCCGATTTCACCCTAGACCCAGTATGGTAGAATAGCAACGAAACGAAACTCGGAAACTCAACTTAACTTTAAAACACTAATTAACGCATCAGTAGATAAGTAGACGTCACAGTTAGAAACTAATTCTCTGAAAATCGGCTAAAACAAGAAGAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End