Plant MITE

SE3120137

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10734
Fragaria vesca
SE3120137
Mutator
FrvM35
LG7:19529299-19529483
TATACTCNG
AGGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCTAATACA      GTAAAA    C    CC   -         C       CACT        -     ------------AAAAGAT     AAAAATA
                          AGGGGA      TTTG ACTC  CAT TTTATAATC ACACTCC    TTTCTTTT ATAGT                   TTCAC       
                          ||||||      |||| ||||  ||| ||||||||| |||||||    |||||||| |||||                   |||||       C
                          TCCCCT      AAAT TGAG  GTA AAATGTTAG TGTGAGG    AAAGAAAA TATCA                   GAGTG       
                   AACATAA      AACTTG    T    -A   T         A       -AAC        A     GTAAAATTAAAACAGAAAT     CACAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120137

TATACTCNGTCATNCTNNCTAATACAAGGGGAGTAAAATTTGCACTCCCCATTTTATAATCCACACTCCCACTTTTCTTTTATAGTAAAAGATTTCACAAAAATACAAAACACGTGAGTAAAGACAAAATTAAAATGACTATAAAAAGAAACAAGGAGTGTAGATTGTAAATATGAGAGTTTAAAGTTCAATCCCCTAATACAA

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