SE3130140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10737
  • Fragaria vesca
  • SE3130140
  • hAT
  • Frvh20
  • LG6:20771120-20771806
  • TATACTCN
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCN    TNCTNCTGATAATGTAGGGCTGGGCACTTAGTACCGGAATCCCGATCCCGTACCGGTCCTGTCCCGAAAGTTAGCGGGACGGGACGGGATAGGTTTGAAAATAGCAATCCCGTCCCGTCTCGTCTCGTTTCAACATTACCATAACGGGACGGGACGGGACAGGACTATCCTGAAAAATCCCGTCCCGTCCCGTAATATTAGAATACTTGATTTTTTAGGTTGCATAGTGTTACAATGCACTCAACCACACTTAATTTGGTCTAAAATAATACTTAATTTTAATTTCATTCATGTTCTTTTTTTTTTGCTTGTGTGATTTTAGATATTTTTAGTTGTTGTTT
        GTCA                                                                                                                                                                                                                                                                                                                                                     
        ||||                                                                                                                                                                                                                                                                                                                                                      
        TATC                                                                                                                                                                                                                                                                                                                                                     
 GTAATAG    CCGACCCGTGCCCTGCCCTGCCCTGCCCAGCCCTAAACCACTTAGGGTAGGGCAGGGCTTTTATTTTTTGTCCGGCCCTACCCTGCTCTTCCGCAAAAATTTTTAGATAGGGCATGCAGGGCTAGAGCTAGCCCTGGCCCTGCCCTAGTCCTAAGGCTGTTTAATTGGAATTTTGTTGTAATTACTTTAATTACCTTTTTTTTATAGATTTTTGTGTGTTTGTTTTTTTTCTTGTAACTACTTTAATTTTCATGATTTTAGTTGTTCTTGTATCCACGTATCCACGATTTAATGTAGGGTGAAATTTTCATGATTTGTAAGGTGTAATTTTTAATTGGGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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