SE3160141

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10738
  • Fragaria vesca
  • SE3160141
  • Micron
  • FrvMi9
  • LG6:27767236-27767677
  • TACATAT
  • ATATATATATATGTGTACAGTCCCCTTCTAGAGTGGGATTCCGTTTTGAATTTAAAGTGCGGGACTCCTTATTTCGCTCACTTTCAAGTCGTATTTTCACATCTCAACCGTACAATGTCTAAAACACAGTGTGTAGATCATTCATGCAAAGTTTCATCAAATTTGAAAATCATTTGGGTACCGAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAC                   G                              T        C                   A  T   A                                                        A                       A        - G A   -    ------A   - AAATAAATCAACAGAACAAA
   ATATATATATATGTGTACA TCCCCTTCTAGAGTGGGATTCCGTTTTGAA TTAAAGTG GGGACTCCTTATTTCGCTC CT TCA GTCGTATTTTCACATCTCAACCGTACAATGTCTAAAACACAGTGTGTAGATCATTC TGCAAAGTTTCATCAAATTTGAA ATCATTTG G T CCG AATT       GAT T                    
   ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | | ||| ||||       ||| |                    A
   TGTGTGTGTGTGTATATGT AGGGGAAGGTCTCACCCTAGGGCGAAACTT AATTTCAC CCCTGAGGAATAAAGCGAG GA AGT CAGCATAAAGGTGTAGAGTTGGCATGTTACAGATTTTGTGTCACACATCTAGTAAG ACGTTTCAAAGTAGTTTAAACTT TAGTAAAC C A GGC TTAG       TGT C                    
ATA                   A                              T        A                   C  T   C                                                        G                       C        A G A   A    CATTAAA   G TTGCCAAGACAAACCTGTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End