SE3160142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10739
  • Fragaria vesca
  • SE3160142
  • Micron
  • FrvMi9
  • LG7:21116353-21116780
  • TATATAT
  • TATATATATATATACAATCCCCTTCCAGAGAGAGATCCCTCTTTGAAATTAAAGTGCATGACTCCTTATTTCGCTCACTTTCAGGTCATATTTCCACATCTCAACCGTACAATGTCTAAAACACAGTGTGTAGATCATTCATGTAAAGTTTCATCAAATTTGAAGATCATTTGGGTACCGAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
              CAA               A                        AT                            A     C                           C                  A                                   -A   -    ------A   - AAATAAATCAACAGAACAAA
TATATATATATATA   TCCCCTTCCAGAGAG GATCCCTCTTTGAAATTAAAGTGC  GACTCCTTATTTCGCTCACTTTCAGGTC TATTT CACATCTCAACCGTACAATGTCTAAAA ACAGTGTGTAGATCATTC TGTAAAGTTTCATCAAATTTGAAGATCATTTGGGT  CCG AATT       GAT T                    
||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| ||||       ||| |                    A
ATATATATATATAT   AGGGGAAGGTTTCTC CTAGGGAGAAACTTTAATTTCACG  CTGAGGAATAAAGCGAGTGAAAGTCCAG ATAAA GTGTAGAGTTGGCATGTTACAGATTTT TGTCACACATCTAGTAAG ATGTTTCAAAGTAGTTTAAATTTCTAGTAAACTCG  GGC TTAG       TGT C                    
              --C               C                        CC                            C     A                           A                  G                                   AA   A    CATTAAA   A TTGCCAAGACAAACCTGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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