SE3120143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10740
  • Fragaria vesca
  • SE3120143
  • Mutator
  • FrvM21
  • LG6:4822744-4823188
  • TATTATTAA
  • AGGAAAAAACTTGCATCCGACCTAGTCTGGACGCAGTTGTCCGGACTCTTTCTTATTTACATATTTTTGTTAATATAAATCATAATTTTAACCGTTTAAAAGTTAAATTAACCAATAAAGATCACCTTTACAAGAAATCAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTATTAAC       A      -----A                    GTT       ----     ------        A             ATA                C            A       C     --                  A     TTTAAA   TT    G    TAA    T  CAA        TC    -A  T G    AAGTAA
          AGGAAAA ACTTGC      TCCGACCTAGTCTGGACGCA   GTCCGGA    CTCTT      TCTTATTT CATATTTTTGTTA   TAAATCATAATTTTAA CGTTTAAAAGTT AATTAAC AATAA  AGATCACCTTTACAAGAA TCAAT      AAA  TTGT TGCT   CTGA TG   TAAACAAA  GACG  TT T GTGA      
          ||||||| ||||||      ||||||||||||||||||||   |||||||    |||||      |||||||| |||||||||||||   |||||||||||||||| |||||||||||| ||||||| |||||  |||||||||||||||||| |||||      |||  |||| ||||   |||| ||   ||||||||  ||||  || | ||||       
          TCCTTTT TGAACG      AGGCTGGGTCAGACCTGCGT   CAGGCCT    GAGAA      AGAATAAA GTATGAAAATGAT   ATTTAGTATTAGAATT GCAAGTTTTCAA TTAATTG TTATT  TCTAGTGGAGATGTTTTT AGTTA      TTT  AGCA ACGA   GGCT AC   GTTTGTTT  TTGC  AA A TACT      
  ACAATTAT       A      CAACAC                    AAT       AAAA     TAAAAG        C             AAC                A            C       A     TT                  -     CATTTG   TT    A    TTC    T  ATA        CC    CG  T G    CTAACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End