SE3150147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10744
  • Fragaria vesca
  • SE3150147
  • PIF/harbinger
  • FrvP17
  • LG5:7207884-7208387
  • TAT
  • AGAGCATCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATA   G      -----CCATGGTA      ATTCTTAGCCAAATTTAACTTATAAAACAAGAATATTTTGTGGAATCTTTTTTTAGCTTACCAGAGTCTCCCACCATAAACTAAATCCTTAGCCAAATTTATAGCCTTCTGGTTTTAAAAAACACTCCCACCATAAGCTAAATCCAAGGTAAAGTCATTTATTTTTCTTTTTTCATATATTTGTTTAAATCAATAATTACTCATAAAAAAATATTATATAAAT
    AGA CATCTC             GGCTAA                                                                                                                                                                                                                               
    ||| ||||||             ||||||                                                                                                                                                                                                                               A
    TCT GTAGAG             TTTAAA                                                                                                                                                                                                                               
  AA   G      AATAATTTTTCAA      TTGGATACAAATGAGAGTAGTATTCGATTTAATGTAAAAGATTCTATTTTTTAAACCGAACTCGATAAACCGAATACTTCAAACATTCGATTTTAATTTACAATAAAATAAATTGAAATGTAAAGAGGAAAATTAAATGTGATAGTAATTTTAATTTTTAAGCAATGAGTGTTGGTAGCGCTTTTAGATCTGCTCTAGAAAGTATACTCGAGGCATAGTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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