Plant MITE

SE3120149

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10746
Fragaria vesca
SE3120149
Mutator
FrvM4
LG6:3877773-3877929
TATATAAGT
TAGGG

Secondary structure and sequence

TSD TIR

5'

3'

TATATAAGT     -TTCCGCTGA      C  T                 A      G              AATAATTC
         TAGGG          TATACA AT TGTATGGCATACATCAA TCGTGA CCGTCCGATCGTTT        
         |||||          |||||| || ||||||||||||||||| |||||| ||||||||||||||         
         ATCCC          ATATGT TA ACATATTGTATGTAGTT GGCACT GGCAGGCTAGCAGA        
  ATTGAAT     TGAAAAAATG      A  C                 C      G              ACTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120149

TATATAAGTTAGGGTTCCGCTGATATACACATTTGTATGGCATACATCAAATCGTGAGCCGTCCGATCGTTTAATAATTCAAAATTCAAGACGATCGGACGGGTCACGGCTTGATGTATGTTATACACATATGTATAGTAAAAAAGTCCCTATAAGTTA

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