SE3160150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10747
  • Fragaria vesca
  • SE3160150
  • Micron
  • FrvMi3
  • LG4:4919019-4919455
  • TATATAT
  • TATATATATATACAGAGCTTCTCAGCTGCGGACGTCCTCATTTATTCTTACGGTGCGGATTTCCACTTTACACTCGCTTTTCAATCTAATTTTCATATCTCCACTGTCTAGTATTTAGGTACTAATGTATAGATCATCTCTGCAAAATTTCAGCCAATTTGGTTATCATTAAGGCACTCAAAACTGCGTTTTTCTGTTATAAACATGAACGGTTCAAGTTCGACAGAATTATGT

Secondary structure and sequence

TSD    TIR
5'



3'
                GC       C      C    T                                      C    C   CT                    C    A                                A                                    A  -------------------    TT       ATA   A    C
TATATATATATACAGA  TTCTCAG TGCGGA GTCC CATTTATTCTTACGGTGCGGATTTCCACTTTACACTCG TTTT AAT  AATTTTCATATCTCCACTGT TAGT TTTAGGTACTAATGTATAGATCATCTCTGCAA ATTTCAGCCAATTTGGTTATCATTAAGGCACTCAAA CT                   GCGT  TTCTGTT   AAC TGAA 
||||||||||||||||  ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||                   ||||  |||||||   ||| |||| G
ATATATATATATGTCT  AAGAGTC ACGCCT CAGG GTAAATAAGAATGCCACGCCTAAAGGTGAAATGTGAGT AAAA TTA  TTAAAAGTGTAGAGGTGGCA ATCA AAATCTATGATTACATATCTAGTAGAGACGTT TAAAGTCGGTTAAATCAGTAGTAATTCCGTGAGTTT GA                   TGTA  AAGACAG   TTG ACTT 
                AA       C      A    C                                      A    A   AC                    A    G                                A                                    -  GCTAATTTGGTTACCTACT    TT       --C   A    G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End