SE3130151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10748
  • Fragaria vesca
  • SE3130151
  • hAT
  • Frvh11
  • LG6:34827347-34827858
  • TAGATTGA
  • TTGAAGCAGTGGCGTAGCTAGCTAGGGGTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGA    AG               -----------CT         ---------       AATTGAACCCTCTCAACTTTTGAAAAAGCTTAATTAGCCTTAATGAACAAAAATAAATTGACATTTCTTTTTGAGAAATCTTTAATTAATCTTAAATATTCTTCAACACCAATAGAATGAACTAAAAATTTATACTATTAAAATACTTAGTCTAATTAATACAAATCGTGTGAATGGTTTTTTACCTTACTAATGTGTACTTTAA
    TTGA  CAGTGGCGTAGCTAG             AGGGGTCAA         AGGGTTC                                                                                                                                                                                                             
    ||||  |||||||||||||||             |||||||||         |||||||                                                                                                                                                                                                              
    AGTT  GTCACCGCATCGGTC             TTCCCAGTT         GGATTAT                                                                                                                                                                                                             
  GA    AG               TTTACAATGAATC         TTAAATAAT       TTAGTTTAAGTAAAAGTTAGTGAGAGATCGATCGTGCTATTAGAAGAATTTATTTGAAACTTTAAAGCACGTGCTATTTATAACTCTTTTTACACAACGTAAAAGAAAAAAATCTCTATCACAGTTACATACCATTTGTAATTACACAACGAAGATAAATCGAATAAACATTACCTTTTTTTTTAGCATTTACCTTAAGTTTCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3