SE3120155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10752
  • Fragaria vesca
  • SE3120155
  • Mutator
  • FrvM29
  • LG3:1817746-1818398
  • TATTACAAA
  • AAGGGTGCGTCTATCGCCACCCCACAAACTGTTTTGTTCACTCCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTACAA                      C                       ------  G    TGATTTATCAAAATACCAAAATACCCTGATGTAAAATTACAGCAAGAGACATTAAGTTGTTAAAATTACTAATTTTTTTTCTTTTTCTTTTTTTATCCTTTTGTTTTGGATGAACACGCATACTTCATAAACCCTAACTCAACTTTATCATATTCGATCATTCTGTAGAGTCTGAAGACGCTAGCATTCAACCTGAAAATGAGGTGAATTGTTTGTATTTTTTTTTTCTTCTCTTTTTTTCTTTGTTGATGTTTCGTCTATCTT
        AAGGGTGCGTCTATCGCCACCC ACAAACTGTTTTGTTCACTCCAC      AC TTGT                                                                                                                                                                                                                                                                        
        |||||||||||||||||||||| |||||||||||||||||||||||      || ||||                                                                                                                                                                                                                                                                        T
        TTCCCACGCAGATAGCGGTGGG TGTTTGATAAAACGAGTGAGGTG      AA ATGT                                                                                                                                                                                                                                                                        
  AAAACA                      A                       TAAGAG  -    GGGGTAAATATATAAAAATAAACATTTAGATGAAACAAGTGGGTAAATGTTATGGATTTTATGGTAAAAGAGTTAGGATGAAATAAGTGAGTAAATGTTATGGATTTTATATAAAAAGAGTAATATGAAACAAGTGGGATATAAGAGAAAAGGTAATGAGGTATGAAAACTCAAAAAACTTGACCAGATACGCAATAAGTATTTATGCCATGTCAATAGGTACTCTTAAATGTATGTTTTTAGTTGTATCCTTTATTACTCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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