Plant MITE

SE3120157

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10754
Fragaria vesca
SE3120157
Mutator
FrvM17
unanchored:9281949-9282490
TATAACATT
GGGTGCGGCTATTTCCACCTCACTAAATGCTCAGTTCACCCCACGT

Secondary structure and sequence

TSD TIR

5'

3'

TATAACATTAT             T                 CAG    C   A   ------CT      TTACCTTTAAAATTCCAATTCTGCCATTAAAATTTTGTGAAAATCTAATTTTTATTTTCTTTCTTTTAACTTACAATTACAAAAATGATAAAATATATACAAATATTTCATCAATATAATTGTCGCATATCTCCATTCTTCTCAAACCACATCCTATGTTCTCCTCAATCTATTTCTTGAGTTCTTTCTTTACTATTATGAATA
           GGGTGCGGCTATT CCACCTCACTAAATGCT   TTCA CCC CGT        AATTTT                                                                                                                                                                                                            
           ||||||||||||| |||||||||||||||||   |||| ||| |||        ||||||                                                                                                                                                                                                            T
           CCCACGCCGATAA GGTGGGGTGGTTTACGA   AAGT GGG GTA        AAAACA                                                                                                                                                                                                            
  TATTACAAT             C                 AAA    A   C   AACCAAAA      CTTTTATATTATAATTTGATTTTAGGTTTGTTGTGGTTAAAAAATGTAGAAAGGTAACCTTTTTTTTTAGAGATGTAAAAAATTTAGTATAAACTCTTAGTGAAGTTAGAAGTTGTACCACCAATATGTCACACTATATACCCTAACAAGCAAGAATAAAAATAAAATAAATACTGAAGTTTGCATCATAAAGTATATATATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120157

TATAACATTATGGGTGCGGCTATTTCCACCTCACTAAATGCTCAGTTCACCCCACGTCTAATTTTTTACCTTTAAAATTCCAATTCTGCCATTAAAATTTTGTGAAAATCTAATTTTTATTTTCTTTCTTTTAACTTACAATTACAAAAATGATAAAATATATACAAATATTTCATCAATATAATTGTCGCATATCTCCATTCTTCTCAAACCACATCCTATGTTCTCCTCAATCTATTTCTTGAGTTCTTTCTTTACTATTATGAATATTATATATATATGAAATACTACGTTTGAAGTCATAAATAAAATAAAAATAAGAACGAACAATCCCATATATCACACTGTATAACCACCATGTTGAAGATTGAAGTGATTCTCAAATATGATTTAAAAAATGTAGAGATTTTTTTTTCCAATGGAAAGATGTAAAAAATTGGTGTTGTTTGGATTTTAGTTTAATATTATATTTTCACAAAAAAAACCAAATGCGGGATGAAAAAAGCATTTGGTGGGGTGGCAATAGCCGCACCCTAACATTAT

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