SE3160158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10755
  • Fragaria vesca
  • SE3160158
  • Micron
  • FrvMi6
  • LG6:28378342-28378795
  • TATATAT
  • TATATATATACAGCCCCCTTCCATTGAGGGATCCCTATTTTTAGCCACTTTCTAGGGATAGGGCATTACACCACTTCCCAATTGAATTTTTACATCTCCACCGTTCATATCTTAGGTCTATATGAGTAGATCACCTCTACAAAATTTCATATGATTTGGTGATCGTTAAGACTTTCAAAAGTTTGATTTAGTTTTAATGATTTTGAACGGT

Secondary structure and sequence

TSD    TIR
5'



3'
             CC        T                 T  C  C   C                     -   C  A    AAT                                                                                   A                                 G      CCAGCTTATA
TATATATATACAG  CCCTTCCA TGAGGGATCCCTATTTT AG CA TTT TAGGGATAGGGCATTACACCA CTT CC ATTG   TTTTACATCTCCACCGTTCATATCTTAGGTCTATATGAGTAGATCACCTCTACAAAATTTCATATGATTTGGTGATCGTTAAG CTTTCAAAAGTTTGATTTAGTTTTAATGATTTT AACGGT          
|||||||||||||  |||||||| ||||||||||||||||| || || ||| ||||||||||||||||||||| ||| || ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||           
ATATATATATGTC  GGGAAGGT ACTCCCTAGGGATAAAA TC GT AAA ATCCCTATCCCGTAATGTGGT GAA GG TAAT   AAAATGTAGAGGTGGCAAGTATAGAATCCAGATATACTCATCTAGTGGAGATGTTTTAAAGTATACTAAACCACTAGCAATTC GAAAGTTTTCAAGTTAAATCAAAATTACTGGAA TTGCCA          
             CC        T                 T  A  -   T                     T   A  C    ATT                                                                                   C                                 G      AAATCAAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End