SE3120159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10756
  • Fragaria vesca
  • SE3120159
  • Mutator
  • FrvM15
  • LG7:294049-294451
  • TATATAAAC
  • GGATTAATTTCAGTTTACACCCCTAAGGTTTAGGGTTAACATCATTTCACTCCCCATACTTTTAATTTTAAAAATTTACCCCCTAAAGTTTTCAATTTTCATAAATCATTCCCAATTGCTGAAATTCCGTCTAACTCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATAAACTT                  A     A      A       C   A          C              A                                      TT C                      CTC   -----C   AATTTTGACTTCATAACTCACTAAAAGGGCTAAAATAGTCTTATA
           GGATTAATTTCAGTTTAC CCCCT AGGTTT GGGTTAA ATC TTTCACTCCC ATACTTTTAATTTT AAAATTTACCCCCTAAAGTTTTCAATTTTCATAAATCA  C CAATTGCTGAAATTCCGTCTAA   GGA      GTT                                             
           |||||||||||||||||| ||||| |||||| ||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||   |||      |||                                             A
           CCTAATTAAAGTCAAATG GGGGA TCCAAA TCCAATT TAG AAAGTGAGGG TATGAAGATTAAAA TTTTGAATGGGGGATTTCAGAGGTTAAAAGTATTTAGT  G GTTAACGATTTTAAGGCAGGTT   CCT      CTA                                             
  TTCAAATAT                  -     C      A       A   C          T              C                                      TT T                      AAA   CTTTTA   TCGTACTTTAGAATCTTTTTTACAGTATTTTCCGCTAAATACAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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