Plant MITE

SE3120169

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10766
Fragaria vesca
SE3120169
Mutator
FrvM14
LG5:1911875-1912074
ATCAGATCA
GATCAAAGGAGAGCTTCTAATGAGGATTTTATAATGAGAACTAAATAAGGACTTTCAAATAAACGGTTAGATGAATATTT

Secondary structure and sequence

TSD TIR

5'

3'

ATCA    --AAA  A                            A     ATA    C        A       A   -GA      TAACTTTTAA    TA
    GATC     GG GAGCTTCTAATGAGGATTTTATAATGAG ACTAA   AGGA TTTCAAAT AACGGTT GAT   ATATTT          TTGA  
    ||||     || |||||||||||||||||||||||||||| |||||   |||| |||||||| ||||||| |||   ||||||          ||||  T
    CTAG     CC CTCGAAGATTACTCCTGAAATATTATTC TGGTT   TCCT AAAGTTTA TTGCCAA CTA   TATGAG          AACT  
  AA    ACTAC  C                            C     CAC    A        C       C   ATG      --TATCCTTA    TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120169

ATCAGATCAAAGGAGAGCTTCTAATGAGGATTTTATAATGAGAACTAAATAAGGACTTTCAAATAAACGGTTAGATGAATATTTTAACTTTTAATTGATATTTTCAAATTCCTATGAGTATGTAATCCAACCGTTCATTTGAAAATCCTCACTTGGTCCTTATTATAAAGTCCTCATTAGAAGCTCCCCCATCAGATCAA

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