Plant MITE

SE3120170

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10767
Fragaria vesca
SE3120170
Mutator
FrvM24
LG6:36288378-36288554
GACCTCTTT
TTGGATACAAATTTGCCGACCACCTTTAGTTGCCCACCAAAGTGTCCACCCTCTTAGTCTATTAACACATGT

Secondary structure and sequence

TSD TIR

5'

3'

GACCTCT                      C     G       C        C   C                      ATTTTCAA      TAACTT
       TTGGATACAAATTTGCCGACCA CTTTA TTGCCCA CAAAGTGT CAC CTCTTAGTCTATTAACACATGT        ATTATT      
       |||||||||||||||||||||| ||||| ||||||| |||||||| ||| ||||||||||||||||||||||        ||||||      T
       AGCCTATGTTTAAATGGCTGGT GAAAT AATGGGT GTTTCACG GTG GAGAATTAGATAATTGTGTACA        TAATAG      
TTTCTCC                      A     A       A        A   A                      -GTTAAAA      TTCTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120170

GACCTCTTTGGATACAAATTTGCCGACCACCTTTAGTTGCCCACCAAAGTGTCCACCCTCTTAGTCTATTAACACATGTATTTTCAAATTATTTAACTTTATTCTTGATAATAAAATTGACATGTGTTAATAGATTAAGAGAGTGAGCACTTTGATGGGTAAATAAAGATGGTCGGTAAATTTGTATCCGACCTCTTT

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