Plant MITE

SE3150171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10768
Fragaria vesca
SE3150171
PIF/harbinger
FrvP1
LG4:15468487-15469107
TAT
AGGCCATCTCCAGTAATAGAGGTTATAGAGCC

Secondary structure and sequence

TSD TIR

5'

3'

TATA               AT     -     ---GA   AAATCCTAAAT  -    -   A      TC  CAACAAGAACTTAGAAGAGGGTCAAAGGGCCATCAAAAGGGCCAAACATAGCCCTTTGGCTAGCCCGGGCCAAACCAAATTGTGGTCCCAAATGAAATTAAAAAAACTAAAAGTATGCATATTAGTTGATTGATGAATACTCAAATTATAACAATTGTCAACTTTCTATTGGATTATTTCATTCTCATCTCATTACAACTGGTAAATTCTCTCAACCCCAAAAATTCATATGGCTAATATCTTATTTTATT
    AGGCCATCTCCAGTA  AGAGG TTATA     GCC           TT TGGC CTT TTTTAA  TC                                                                                                                                                                                                                                                           
    |||||||||||||||  ||||| |||||     |||           || |||| ||| ||||||  ||                                                                                                                                                                                                                                                            
    TCCGGTAGAGGTCGT  TCTCC AATAT     CGG           TC CGAT TTA AATCGG  CA                                                                                                                                                                                                                                                           
  AA               CC     C     AACCC   -----------  C    A   -      --  GTTTTTTATAATAAAAAATAAATATCTGAAGATTTACTAGAGATTATTCTCTCCCGGTTTAAAATCGAGAAAACTTATAAAATACTAAAGTGTAATATGAAAAATTATAAAAAGTGAAATTTATGTTTATATAACAGTGTAACATAGTGTATGCCCATCCATGGTATATTAAAGAGTGAATATCTAAATAAAATAATATTGTAATAAACTTAAACCTGGTTTAATGATTATAAATTTAATTGATAATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150171

TATAAGGCCATCTCCAGTAATAGAGGTTATAGAGCCAAATCCTAAATTTTGGCCTTATTTTAATCTCCAACAAGAACTTAGAAGAGGGTCAAAGGGCCATCAAAAGGGCCAAACATAGCCCTTTGGCTAGCCCGGGCCAAACCAAATTGTGGTCCCAAATGAAATTAAAAAAACTAAAAGTATGCATATTAGTTGATTGATGAATACTCAAATTATAACAATTGTCAACTTTCTATTGGATTATTTCATTCTCATCTCATTACAACTGGTAAATTCTCTCAACCCCAAAAATTCATATGGCTAATATCTTATTTTATTAATATAATAGTTAATTTAAATATTAGTAATTTGGTCCAAATTCAAATAATGTTATAATAAAATAAATCTATAAGTGAGAAATTATATGGTACCTACCCGTATGTGATACAATGTGACAATATATTTGTATTTAAAGTGAAAAATATTAAAAAGTATAATGTGAAATCATAAAATATTCAAAAGAGCTAAAATTTGGCCCTCTCTTATTAGAGATCATTTAGAAGTCTATAAATAAAAAATAATATTTTTTGACGGCTAAATTATAGCCCTGGCCCCAATATAACCCTCTCCTGCTGGAGATGGCCTAA

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