SE3120173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10770
  • Fragaria vesca
  • SE3120173
  • Mutator
  • FrvM38
  • LG3:22400897-22401421
  • TATAAATTT
  • AAATTTTTGGATTAAATTCAATTTACCCCCCAAATCTTTGGTACCAAAATCAGTTCAGTCCTGCAACTTTTTTTAAATTAGTTCGTCTCTTCAACTTTTGTAAACACATCAGTTGGGTCCAACTTTTGATTTCCTCTCGAAATATGACGTCACCCAAAGCTGTTGGAACTGACAAAGGGACATATAATTCAGCTTTATCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TAT   TT      -TT       A         C           A                    C                        C                           GTC   C      T             A    G     CA            C            A       C  C         -----CT   -  AA   AAAATAACCAATTTGACAAAATATTCTAAAAGAGATAAAAAAAAAT
   AAA  TTTGGA   AAATTCA TTTACCCCC AAATCTTTGGT CCAAAATCAGTTCAGTCCTG AACTTTTTTTAAATTAGTTCGTCT TTCAACTTTTGTAAACACATCAGTTGG   CAA TTTTGA TTCCTCTCGAAAT TGAC TCACC  AAGCTGTTGGAA TGACAAAGGGAC TATAATT AG TTTATCCCT       TCA GA  GGT                                              
   |||  ||||||   ||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||   ||| |||||| ||||||||||||| |||| |||||  |||||||||||| |||||||||||| ||||||| || |||||||||       ||| ||  |||                                              G
   TTT  AAATCT   TTTAAGT AAATGGGGG TTTAGAAATCA GGTTTTAGTCAAGTCAGGAT TTGAAAGAAATTTAGTCAAGCGGG AAGTTGAAAGCATTTGTGTAGTTAGCT   GTT AAAACT AAGGGGAGCTTTA ACTG AGTGG  TTCGACAATTTT ACTGTTTCCCTG GTATTAA TC AAATAGGGG       ATT CT  TTA                                              
      TT      TTT       C         T           C                    A                        A                           -AA   A      T             C    A     -C            T            A       A  A         AGTAAAA   G  --   CAGACTTTAAGGGAGTAACAAAAAATAAGTAAAACGGTTTATCTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End