SE3120174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10771
  • Fragaria vesca
  • SE3120174
  • Mutator
  • FrvM37
  • LG3:25696474-25696839
  • TATTAGACT
  • TAGACTTCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAT     TTC  AAATTC              A  CAAATGAA        ACAACTAATATGCAATATTTTGATCCGGTCATCCACGTCGCATTATCATGCATGTATTCTAATACCGTTAACAAAATTGAAACCGGAAAAAATATAGTCTCAAGTGTTTCCAACATAAGAGGTGAGAACCTGAGAT
     TAGAC   GA      TTCTACGCACCAAG TG        CTGATCGA                                                                                                                                        
     |||||   ||      |||||||||||||| ||        ||||||||                                                                                                                                         
     ATTTG   CT      AAGATGCGTGGTTC AC        TGAACGTG                                                                                                                                        
TTCAG     --C  -CACCT              C  -------A        GTAATTACACGTTCAGGAGTTTAACAACATGCACTTCTAGCTTACTTCTGATCTGTCTCTGGGATTTAAGGAAAGAAAGTAAAAATAAAAAGTAGATTAGTTTAATTCACGGGTATTATTCTCATAGAGAATAAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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