SE3120176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10773
  • Fragaria vesca
  • SE3120176
  • Mutator
  • FrvM29
  • LG5:1161665-1162315
  • TATACTCNG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCN    TNCTNCTGATTATAGGGTGCGTCTATTGCCACCCCACAAACCAGTTTGTTCACCCCACATTCTTTTCACACCCCACTCATATAATTTTAATGGCAAGTCTACTTTGTTCACCCATTAACAATACCTAAAAAACCCTTTTCAAAATTCTATTTTATTCACCCTACATTCTCTTCATATATTTTGTCAAATTCAGATTTGCTCAAGGTAAGTAAAATCACCAAGTGAACAAAAATTCACATGAAAGTATAAATCCAAGTTAAAGAACAAGAAAAAATTGTCAAATTTAACAACTCAATGGTATCAGTCGATATCAAGATACACAA
        GTCA                                                                                                                                                                                                                                                                                                                                   
        ||||                                                                                                                                                                                                                                                                                                                                    
        GTCC                                                                                                                                                                                                                                                                                                                                   
  ATATTA    CACGCAGATAACGATGGGGTGTTTGGTGAAACGAGTAGGTGTGCAACAACTAAATAACTTTATGTTTTTATAGTACTACATTTTAATGTTGTTCCCTGTTATTCGACAATGTTTAATGTTTAAAAATAAAAATAAAAATAAAAAAACAAAATCTACTTGTGTTTAAAGTATTGAGATTGAATCTAAATAGTATAAGCCAGCACTGAGCACTCATACTTCTCTGATCGTGAATTGTACTTTTACTCCATTTGACAAATATATAAAAAAAAGAAACAACTACTAAGTAGATAGATAAATGAGTAATAAAGAGTATAAATGTCTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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