SE3140177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10774
  • Fragaria vesca
  • SE3140177
  • CACTA
  • FrvC4
  • LG4:23234995-23235167
  • GCG
  • GCGCACAACAACAATATGGAGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
   G           T         AAGCC    AATAAGTGTAGCCTTTAGAGGTGTTGCATTCTTCGTTATGTATGGCAAGTGTGAGT
 GC CACAACAACAA ATGGAGCAA     ACAC                                                        
 || ||||||||||| |||||||||     ||||                                                         
 CG GTGTTGTTGTT TACCTCGTT     TCGG                                                        
G  -           T         -----    AAATCTACACAACGTTAGGTGTGAACACACCGTTAAAAAGGGAGTAGAGGTGATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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