SE3140178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10775
  • Fragaria vesca
  • SE3140178
  • CACTA
  • FrvC5
  • LG7:2341183-2341367
  • CTC
  • CACTACAACAATATGGAGCGAAGGTCATACATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTC                                   GTGTAACCTT   T         -- -    CCATAATTAAGTATGACAAGTGAAGGTATT
   CACTACAACAATATGGAGCGAAGGTCATACATCTT          TAG GGTGTTGCA  T TTTC                              
   |||||||||||||||||||||||||||||||||||          ||| |||||||||  | ||||                               
   GTGATGTTGTTATACCTCGTTTCCGGTGTGTAGAA          ATC CTACAATGT  A TGTG                              
CTC                                   ----------   T         TA G    TATACATAGTAAAAAAAGAGTATGAGGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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