SE3120180

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10777
  • Fragaria vesca
  • SE3120180
  • Mutator
  • FrvM38
  • LG3:25805850-25806245
  • TATACTCNG
  • GAAAAAATTTCAGTTTACCTCCCTAATATTTGGTGGCAAAATCAGTTCAGTCCTGTAATTTTTTTTTAAATTAGTTCGCCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCAAAAATAAA   AA  T              C    A       G                              T                 CAACTTTCAT    ACATCAGTTTACTTTTTTTAAAATTAGTTCGCCCCTTCAACTTTTGTAAACACATCAGTTTTGTCCAATTTTTGAATTTCCCTTAAAATATGACG
                           GAA  AA TTCAGTTTACCTCC TAAT TTTGGTG CAAAATCAGTTCAGTCCTGTAATTTTTTTT AAATTAGTTCGCCCCTT          AAAC                                                                                               
                           |||  || |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||          ||||                                                                                                
                           CTT  TT AAGTCAAATGGGGG ATTA AAACTAC GTTTTAGTCAAGTCAGGACGTTGAAAAAAA TTTAGTCAAGCGGGGAA          TGAA                                                                                               
                  AAATAAAAA   AA  T              A    G       A                              T                 --------AT    AAAAATTTAAGTCAAATGGGGGATTAGAAACTACAATTTTAGTCAAATCAGGACGTTGAAAAACAATTTTTACCCAGGGAAACAGTCAAAACACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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