SE3160183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10780
  • Fragaria vesca
  • SE3160183
  • Micron
  • FrvMi2
  • LG7:5311406-5311806
  • ATATATA
  • ATATATATTATACAGTCGGGATCAGAGGCAGATGTCCGCACACCCTTAAAGTGCGGACGTGCCTCCGTTCTCCACCGTACGGCTCCGACGACACGGCGCCTCCACCCCAGCAGCCTCCAGCAGCGTCCCCGATCATTTTTCCTCCCCGGCGAGTCCACCAAATTCCAGTTTTCCGACGAGATCGATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
       T    - A TC      -     CA            C -                G            AC    C     C      AC   --         C    A                         T                  A  A               A       ------      GG
ATATATA TATA C G  GGGATC AGAGG  GATGTCCGCACA C CTTAAAGTGCGGACGT CCTCCGTTCTCC  CGTA GGCTC GACGAC  GGC  GCCTCCACC CAGC GCCTCCAGCAGCGTCCCCGATCATT TTCCTCCCCGGCGAGTCC CC AATTCCAGTTTTCCG CGAGATC      GATTTT  
||||||| |||| | |  |||||| |||||  |||||||||||| | |||||||||||||||| ||||||||||||  |||| ||||| ||||||  |||  ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||      ||||||   
TATATAT ATAT G C  TCCTAG TTTCT  CTGCGGGCGTGT G GAATTTCACGCCTGCA GGAGGCAAGAGG  GCAT CCGAG CTGCTG  CCG  CGGAGGTGG GTCG CGGAGGTTGTCGTAGGGGCTAGTGA AGGGAGGGGCCGCTCAGG GG TTAAGGTCAAAAGGC GCTCTAG      TTGAAG  
       T    A C TC      A     -C            C A                G            AA    A     A      --   CA         A    C                         T                  C  C               C       TGGGTT      TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End