SE3130184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10781
  • Fragaria vesca
  • SE3130184
  • hAT
  • Frvh6
  • LG1:17645795-17645998
  • TAAGTCAC
  • GTCACAATAGTAGTGTTCACTTGGTCAGTAATTGACCAAGATATTCATGGTCAGTCACCGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA  C  -A                             C       T                   GATATAA          ---   G     T    TTA
   GT AC  ATAGTAGTGTTCACTTGGTCAGTAATTGA CAAGATA TCATGGTCAGTCACCGTTG       ATCTAAGGGT   GGA AGAAT ATTT   
   || ||  ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||       ||||||||||   ||| ||||| ||||   A
   CA TG  TGTCATCACAAGTGAACCAGTCATTAACT GTTCTGT AGTACCAGTCAGTGGCAAT       TAGGTTCCCA   TTT TTTTG TGAG   
 AA  C  AA                             A       C                   ATAAATG          ACG   G     T    TTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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