SE3150186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10783
  • Fragaria vesca
  • SE3150186
  • PIF/harbinger
  • FrvP7
  • LG2:10238016-10238382
  • TAT
  • AGAGCATCTTTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATT      T        AT        TTTTT    TAA    ---   -------- CAAATTAGCTAAAATGTCATTTTGGCTAGCCACTTTAGAAATGTGGTTGCATCAATGCTCTCTATTTTAGCTAGCATTACATCAACATTATTCTTCAAATAGAAATTAAATAGTTTAAATATATTTATATATCAC
    AGAGCA CTTTAGCA  GCTAGCCA     AAGT   ATTT   TAG        T                                                                                                                                       
    |||||| ||||||||  ||||||||     ||||   ||||   |||        |                                                                                                                                       A
    TCTCGT GAAATCGT  TGAGAGAT     AAAA   TCGA   TCG        T                                                                                                                                       
  AT      T        -C        -----    ---    AAA   ATAAAATC TTCGCACAAATCGAAAAAACCTACAAAATCCTCGAGGTCGTCTGATCGGTTTGAATTCGATAATATTGAAAATCGATAGAGCGACTGAGTCTACTCCGATCGATATTAAATTACGTAAGAAATATTCTATAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3