SE3130187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10784
  • Fragaria vesca
  • SE3130187
  • hAT
  • Frvh23
  • LG7:11383377-11383909
  • TATACTCN
  • CGTTTGACGCAATGGCGGATCCAG

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTN    T   G  AT      TC   GATTTAAACATG     -G  TT   -    GGCCGAAGGCCAAAAAAAATTTTGTTGTATACCCATGCAAAGTATAGGAGCTCAAGCATACGTTAATTACGAGTCTTTGAAAGAAATGAAAATAGGCATCAATGAAAGTAGAAGAAAATTTTAAAAATAAGAGACAAATTAGAAAACCTAATAAGAATAGACTGAAATCCAATATTTCATCGGATTCTATATAGGAAAAAGAAGATTAGAAAATTTATAT
                 CGTT GAC CA  GGCGGA  CAG            GGGTG  GC  CAA ATTT                                                                                                                                                                                                                            
                 |||| ||| ||  ||||||  |||            |||||  ||  ||| ||||                                                                                                                                                                                                                             
                 GCAG TTG GT  CCGCCT  GTC            CGTCT  AA  CCA CCCG                                                                                                                                                                                                                            
                     T   -  CC      CC   -----------A     CC  --   C    AGTTCGGGTTGGTTCCAAAAACCCTAACTTTTTTTTTGATTCACATAATACAAAAAAAATAATCTATATATAGAAAAAGCACGTAAGTTCGGGTGGATTGAAAGTATGAAAATGCGTAGAGTAGAAGGAGACATACGCTGATGTAGAGATGAGAAGTTAAGAAGAAGAATAGGAAGATCAAAATATCAGAATAGGACGAATTTAGAGATTTTAAGAAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End