SE3120190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10787
  • Fragaria vesca
  • SE3120190
  • Mutator
  • FrvM13
  • LG3:25309347-25309765
  • TTAATTTTT
  • GGATTAAATTCAGTTTGCCCTCTCGTGCTTTAGGTCAATAATCAATTTGGTCCTATATCTTTTTTTTAATAACGTTGGCCCTTGTACTCTGAAATGATATCATCTAAGTCCAAAATTTGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATTTTT                                            A                      -           C           G     A     T               G   TTTA  -G       -----       - TTGGTCCTT   --   TGATTTTTTTTTTTTTCTATCGTTAGAATGTTTATTTGCCC
         GGATTAAATTCAGTTTGCCCTCTCGTGCTTTAGGTCAATAATCA TTTGGTCCTATATCTTTTTTTT AATAACGTTGG CCTTGTACTCT AAATG TATCA CTAAGTCCAAAATTT AAT    GT  CAAAAAT     GGGTGAG T         GAA  AAA                                         
         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| |||    ||  |||||||     ||||||| |         |||  |||                                         T
         CCTAATTTAAGTCAAACGGGGGAGCATGAAATCCAGTTATTAGT AAACCAGGGTATAGAAAAAAAA TTATTGCAACC GGAACATGAGA TTTGT GTAGT GATTCAGGTTTTAAA TTA    CG  GTTTTTA     ATAAACG C         TAA  TTT                                         
TTTTTAATT                                            C                      A           A           A     A     T               A   -TAC  AA       TTATA       A ---------   AC   GACTGTACCCCTAGGTATAAACTCGAAAAATTGGATGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3