Plant MITE

SE3120193

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10790
Fragaria vesca
SE3120193
Mutator
FrvM40
unanchored:5991269-5991468
AATATCATC
GGATTCAAATTTGCCAACCACCTTTTATTTGACCATCCTAATGACTACTATTTAGATTGGTGTCACATGTCTCTTTAAATTGTTTTAC

Secondary structure and sequence

TSD TIR

5'

3'

AATATCATC             C       C    A                                   T      T   -   -AAA     TT  TTT
         GGATTCAAATTTG CAACCAC TTTT TTTGACCATCCTAATGACTACTATTTAGATTGGTG CACATG CTC TTT    TTGTT  AC   
         ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||    |||||  ||    
         CCTAAGTTTAAAC GTTGGTG AAAA AAACTGGTGGGATTACTGGTGATAGATCTAACCAC GTGTAC GAG AAA    AATAG  TG   
CTACTATAA             A       T    G                                   T      -   T   AAAA     -T  TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120193

AATATCATCGGATTCAAATTTGCCAACCACCTTTTATTTGACCATCCTAATGACTACTATTTAGATTGGTGTCACATGTCTCTTTAAATTGTTTTACTTTATTGTTGATAAAAAAAAATGAGCATGTGTCACCAATCTAGATAGTGGTCATTAGGGTGGTCAAAGAAAATGTGGTTGACAAATTTGAATCCAATATCATC

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