SE3120195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10792
  • Fragaria vesca
  • SE3120195
  • Mutator
  • FrvM19
  • LG5:3234867-3235307
  • GAATAAAAC
  • GGGAGCCCTTCTAGTGAGGACTCTTAAGTTGAGGACTTGGTGCGGATTTTTCGGCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAATAAAACA                                 G        C           C    CCCACC   CGATCTTATATCCACATCTTGACCGTTCAGTTTATAGGTATTTATGAGTAGATCATTTCTGCAAATTGTCAGCCATATTGAAAATCGTTAAGACATTCATAAGTGTGATTTACCAATTATGAACTTAAACGGTTCATGTTTGACA
          GGGAGCCCTTCTAGTGAGGACTCTTAAGTTGAG ACTTGGTG GGATTTTTCGG TTAT      TTT                                                                                                                                                 
          ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||      |||                                                                                                                                                 T
          CCCTCGGGAAGATCACTCCTGAGAATTCAACTC TGAACCAC CCTGAAAAGCC AATA      CCA                                                                                                                                                 
ACAAAATAAG                                 A        T           A    ------   AATTTTCTGGATAAAAAGCTAGTGTAGAACCGTAGAGTAGGCAAATCAAAAATCTAGATATACACATCTAGTTGAGATGTTTAAAAGTCGGTTTAGCCACTGGTAATTCTATTGTTTGATCTAGTTTAATTACTTGCTTGGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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