SE3130196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10793
  • Fragaria vesca
  • SE3130196
  • hAT
  • Frvh18
  • LG2:1266750-1266938
  • GGTAAATA
  • CAATGTTCTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTAAATA              ACG      GA    -  -  CGGACAGCCGGTGACTAGTGCCTAGGCGGGTTAATCGGGGGATTAATCGGTTTT
        CAATGTTCTAAAAA   CTAGGT  TAGT CG GG                                                      
        ||||||||||||||   ||||||  |||| || ||                                                      C
        GTTACAAGATTTTT   GGGGCG  GATC CG CC                                                      
ATAAATGG              --A      --    T  G  AATTAGGGACGGATCCGCGATCCGCCACGAAGTGGCAAAGGCAGATCTCTCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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