SE3120201

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10798
  • Fragaria vesca
  • SE3120201
  • Mutator
  • FrvM8
  • LG4:26388730-26389130
  • TTTCCTTTT
  • ATTAATTTCAGTTTACCCCCAGGTTTGAGGTTAACATCATTTCAGTCCCTATACTCTTAATTTTGAAAATTTACCCCATAAAGTTTGCAATTTTCATAAATCAAGTCCAATTGCTAAAATTCCGTCCAATTTGGACGTTAAATGCTAGAATGAAATATTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCCTTTTGA     T              ---       A                                                 A        GC               A  C              C    C              --A  -  AGA    AA     GAAA     TC      GG  AT      TG
           ATTAA TTCAGTTTACCCCC   AGGTTTG GGTTAACATCATTTCAGTCCCTATACTCTTAATTTTGAAAATTTACCCC TAAAGTTT  AATTTTCATAAATCA GT CAATTGCTAAAATT CGTC AATTTGGACGTTAA   TG CT   ATGA  TATTA    AAGGG  CTAAAA  AG  TTATGT  
           ||||| ||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| || |||||||||||||| |||| ||||||||||||||   || ||   ||||  |||||    |||||  ||||||  ||  ||||||   
           TAATT AAGTCAAATGGGGG   TCCAAAC CCAATTGTAGTAAAGTCAGGGGTATGAGAGTTAAAATTTTTAAGTGGGG ATTTCAAA  TTAAAAGTATTTAGT CA GTTAACGATTTTAA GTAG TTAAACCTGCAATT   AC GA   TATT  GTGAT    TTCCC  GATTTT  TC  AGTACA  
TTTTCCTTTCC     T              AAC       C                                                 G        GA               A  A              T    A              AAA  T  -AG    GA     ---A     --      -A  --      TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End