SE3130206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10803
  • Fragaria vesca
  • SE3130206
  • hAT
  • Frvh17
  • LG6:33026803-33027006
  • ATACGATC
  • GATCATCAGTTATGATCACGTGGTCAGCAATTGACGAAGAGATTCATGGTCAGTCATCATTTGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAC    --      TA  A    G       CA      G              C       A  T   GTAA          -   -----  G      TTTA
    GATC  ATCAGT  TG TCAC TGGTCAG  ATTGAC AAGAGATTCATGGT AGTCATC TT GAT    ATCTAATGGT GAA     GA AATTAT    
    ||||  ||||||  || |||| |||||||  |||||| |||||||||||||| ||||||| || |||    |||||||||| |||     || ||||||     
    CTAG  TAGTCA  AC AGTG ACTAGTC  TGATTG TTCTCTAAGTACTA TCAGTGG AA CTA    TAGGTTACTA CTT     TT TTGATA    
  TA    GA      TC  A    A       AA      G              A       C  T   AATG          A   TTGTT  G      TGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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