SE3130209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10806
  • Fragaria vesca
  • SE3130209
  • hAT
  • Frvh27
  • LG1:12235134-12235714
  • TATACTCN
  • CAGTGGCGGATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCGTTCTTTA   T          GGATCTCGAACT     AGG -       AAGTGCATAATTTTTTTTACTGGTTATCAGGAATTAGAATATCTATAATAAGTTTTGGCAAATATGAGCTGAGGAAATAGGGTAGTGAAGATGGCCTTCTATAGCATATTTGTCCAAAATTTAGAGACATTTGACTAACAATTTTGGATTTTGAACATTTATAAACACTATAAACAGGCATAAACCTTAGCTGTATCAAACATAAACATTGAATTTCAAGAATCAAACCAGCGTTAGTCCATCTTGT
                           CAG GGCGGATCTA            TGTCT   C TAATTTT                                                                                                                                                                                                                                                       
                           ||| ||||||||||            |||||   | |||||||                                                                                                                                                                                                                                                       T
                           GTC CCGCCTAGAT            ACAGA   T CCGACGT                                                                                                                                                                                                                                                       
                   ATTTCTTG   C          ------------     --- T       ACCCGACGTCGGATCTGTTCTAAGGACGGGTTTTATAGGGTTCAATATATATATGTCGGTAGTCAGATCTCAACGGTTTTGTTTCTTTCTTTTTCACAAAAGAAGTTGGTCAAGGAGTGGAGGAGCCTGTACGTCTTCTCTTCCTATGTCAGTAGTTCCTTTCACTACTAATTCTACTCTACTCATACACCACATGACATTTCATTCACACTTCTATCTTCATTGTATCTCTCAACCACTAACTCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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