SE3120210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10807
  • Fragaria vesca
  • SE3120210
  • Mutator
  • FrvM19
  • LG7:5353518-5353954
  • CTTGACTTA
  • TGACTTAAGGGAGGGGTTCTAATGAGAACCATTTAGTTGAGGACTAGTTGAAGATTTTTTCATT

Secondary structure and sequence

TSD    TIR
5'



3'
CT   C       A  -            A      T     A          AA         A  ATTGTTTTATTA     AC    CA       TT    -     A   G        T     C     AAAT      -   A            G       AGTT         AAATCAAACTAAATCAAATCAA    CAATCCAAATATGTCAAACATGAGCCGTTC
  TGA TTAAGGG GG GGTTCTAATGAG ACCATT AGTTG GGACTAGTTG  GATTTTTTC TT            CATCC  TTTT  ATCACAT  TTCA ATCTC ACC TTTAGTTT TAGGT TATAT    AGATCA CTT TACAAATTTTCA CCAAATT    ATCGTTAAG                      TGGA                              
  ||| ||||||| || |||||||||||| |||||| ||||| ||||||||||  ||||||||| ||            |||||  ||||  |||||||  |||| ||||| ||| |||||||| ||||| |||||    |||||| ||| |||||||||||| |||||||    |||||||||                      ||||                               
  ATT AGTTCCC TC CCAAGATTACTC TGGTGA TTAAT TCTGATCAAC  CTAAAGAAG AA            GTGGG  AAAA  TAGTGTA  AAGT TAGAG TGG AGATCAAA ATCTA ATATA    TCTAGT GAG ATGTTTAAAAGT GGTTTAA    TAGCAATTT                      TGTA                              
 A   C       C  A            C      T     A          AC         C  ------------     GC    AA       -T    G     C   A        C     T     ---C      A   -            A       CTTT         ----------------------    AGTATTTACACTAAATGGCTAATATTTGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End