Plant MITE

SE3160211

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10808
Fragaria vesca
SE3160211
Micron
FrvMi11
unanchored:4713177-4713582
TATATAT
TATATA

Secondary structure and sequence

TSD TIR

5'

3'

       -TGTCC      A           TTAA   CTTAAAGTAAGAATGTTTTTAGTTCTAGCATGTATTTTGACAATCAAAGCCACCCATTCCCTGGTTACTTACCCACATATGAATCCTACAAAAAATTAGCCAAAATGAAAAACGTTTAACCATTTGATTAGCACAATATTTGATTTAATTTTATCTAACGGC
 TATATA      GGATCT GAGAGGACCTC    ACT                                                                                                                                                                  
 ||||||      |||||| |||||||||||    |||                                                                                                                                                                   
 ATATAT      CCTAGA TTCTCCTGGAG    GAA                                                                                                                                                                  
T      CTCCCT      C           ----   TGAAATTCTTAAACTCCTAAAGATGATAAAATGTAATCATCTACTGAAGACAATTGCTAGAGTTGGCAACTAGGAGATCTAAGTATACGTTCTTTGTACAGATGTTTTAAAGTTGATTAAGATATTAGTAAACCAGTAAGTTTAACTACATTTGTTAACATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3160211

TATATATGTCCGGATCTAGAGAGGACCTCTTAAACTCTTAAAGTAAGAATGTTTTTAGTTCTAGCATGTATTTTGACAATCAAAGCCACCCATTCCCTGGTTACTTACCCACATATGAATCCTACAAAAAATTAGCCAAAATGAAAAACGTTTAACCATTTGATTAGCACAATATTTGATTTAATTTTATCTAACGGCCTACAATTGTTTACATCAATTTGAATGACCAAATGATTATAGAATTAGTTGAAATTTTGTAGACATGTTTCTTGCATATGAATCTAGAGGATCAACGGTTGAGATCGTTAACAGAAGTCATCTACTAATGTAAAATAGTAGAAATCCTCAAATTCTTAAAGTAAGGAGGTCCTCTTCAGATCCTCCCTCTATATAT

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