Plant MITE

SE3120213

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10810
Fragaria vesca
SE3120213
Mutator
FrvM32
LG6:18988434-18989168
TAACTCTGT
GAGAAATTTTAAATACACACCCCTAATATCTTAATACACACC

Secondary structure and sequence

TSD TIR

5'

3'

TAACTCTGT                   C                      CCTT   - A   CACCACCTATCAAGTTTTTCATTTCGGTATTATACTTAATACGCATCTCAAATTGCCTAAAATGCCCTTAATTTATGAAATATTCCGTTATTTAATATATATTTACTATTTGGTATCTCTTTTTACATATTATTTCGTCTAATTTTTGCTAGAAATTTTTGGTTATCATCGTTCAATTTATAATCAAATGATTATTGTTATATCCCAACTCTAAATCACCAATACAAGTTTTCAAAATTCACAAGCTAGTATAACTGTAGAAGTACAGTAGCTATTAAACATAAATAACTAGTTATTCGATAAA
         GAGAAATTTTAAATACACA CCCTAATATCTTAATACACACC    ACT T ATA                                                                                                                                                                                                                                                                                                                
         ||||||||||||||||||| ||||||||||||||||||||||    ||| | |||                                                                                                                                                                                                                                                                                                                A
         CTCTTTAAAATTTATGTGT GGGATTATAGAATTATGTGTGG    AAT A AAT                                                                                                                                                                                                                                                                                                                
TGTTTCAAT                   A                      AAAT   A -   ACAAAGATAACTCTAAAATATCCATTCGATTTACTGATTTTGTATGTAGATAATAATTTTTTTTTTATGCGTGATCTTCATAATAAAAGTTGCAAAAGATAGAATTTTAGCAGTTTTTGTGCATAAGAGGGGGATTGGGGTTAATAAGAGGTGTTAAGTAAACCCAACGCAAAAAAAAAAAAAAAAATATATAGGCATGGTCGAAATCAAACCAGAATGTCTAGTATAACAGTTCATAACGTAGAAACGAAATCAAACTAGAACGTTTAGTATAACAGTTCATGACGTAGAAATAGTACTGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120213

TAACTCTGTGAGAAATTTTAAATACACACCCCTAATATCTTAATACACACCCCTTACTTAATACACCACCTATCAAGTTTTTCATTTCGGTATTATACTTAATACGCATCTCAAATTGCCTAAAATGCCCTTAATTTATGAAATATTCCGTTATTTAATATATATTTACTATTTGGTATCTCTTTTTACATATTATTTCGTCTAATTTTTGCTAGAAATTTTTGGTTATCATCGTTCAATTTATAATCAAATGATTATTGTTATATCCCAACTCTAAATCACCAATACAAGTTTTCAAAATTCACAAGCTAGTATAACTGTAGAAGTACAGTAGCTATTAAACATAAATAACTAGTTATTCGATAAAACATGTCATGATAAAGATGCAGTACTTGACAATATGATTTGCAAGATCAAACTAAAGCAAAGATGCAATACTTGACAATATGATCTGTAAGACCAAACTAAAGCTGGTACGGATATATAAAAAAAAAAAAAAAAACGCAACCCAAATGAATTGTGGAGAATAATTGGGGTTAGGGGGAGAATACGTGTTTTTGACGATTTTAAGATAGAAAACGTTGAAAATAATACTTCTAGTGCGTATTTTTTTTTTAATAATAGATGTATGTTTTAGTCATTTAGCTTACCTATAAAATCTCAATAGAAACATAAAATAATAAAGGTGTGTATTAAGATATTAGGGATGTGTATTTAAAATTTCTCTAACTTTGT

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