SE3160214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10811
  • Fragaria vesca
  • SE3160214
  • Micron
  • FrvMi3
  • LG6:7097188-7097624
  • TATATAT
  • TATATATTTTTTCTCAGGTGCGGATGTCCGCATTTATTCTTACAGTGCGGATTTCCACTTTATACTCATTTTTCAATCGAATTTTCACATATCCACTGTCTAGTCTTTAGATACTAATGTATAGATCATCTCTGCAAAATTTTAGCCAATTTGGTTATCATTAAGGCACTTAAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
             --TTT       G                                       C                    G           A  C          C                                                                     -  CGATTAAACCA   GATGAACATAATTCTGTCAAAC
      TATATAT     TTCTCAG TGCGGATGTCCGCATTTATTCTTACAGTGCGGATTTCCA TTTATACTCATTTTTCAATC AATTTTCACAT TC ACTGTCTAGT TTTAGATACTAATGTATAGATCATCTCTGCAAAATTTTAGCCAATTTGGTTATCATTAAGGCACTTAAA CT           ATG                      
      |||||||     ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           |||                      T
      ATATATG     AAGAGTC ACGCTTGCAGGTGTAAATAAGAATGTCACGCTTAAAGGT AAATGTGAGTGAAAAGTTAG TTAAAAGTGTA AG TGGTAGATCA AAATCTATGATTACATATCTAGTAGAGATGTTTTAAAGTCGGTTAAACCAATAGTAATTCCGTGAGTTT GA           AAG                      
ATATAT       TCCCT       G                                       A                    A           G  A          T                                                                     T  -----CACAAA   ACAATATTTGTACTTGCCAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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