SE3120215

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10812
  • Fragaria vesca
  • SE3120215
  • Mutator
  • FrvM38
  • LG1:8089113-8089618
  • TATACTCNG
  • TAATATTAGAAAAAATTTCAATTTACCCCCCAAATCTTTGGTGTCAAAATCAGTTCAGTCCTGCAACTTTTTTTTTAAATCAGTTCGCCTCGTCAACTTTTGTAAACACATCAGTCGGTCCAATTTTTGAATTCCCCTCGAAATGTGATGTCACCGAAGCCGTTGGAACTGACAAGGGGACCCATAATTCAGCTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNNC           AA  T                                                           T               G                          -                 C                 C      C                                    TCCCCTCATTTTCAAC     ---- TC  -----   TT ACTCATTGTTTTTTATTCATTTTGCCA
                   TAATATTAGAA  AA TTCAATTTACCCCCCAAATCTTTGGTGTCAAAATCAGTTCAGTCCTGCAACTTTTTTTT AAATCAGTTCGCCTC TCAACTTTTGTAAACACATCAGTCGG TCCAATTTTTGAATTCC CTCGAAATGTGATGTCA CGAAGC GTTGGAACTGACAAGGGGACCCATAATTCAGCTTTA                GAAAT    G  TG     AAA  C                           
                   |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||                |||||    |  ||     |||  |                            
                   ATTATAATCTT  TT AAGTTAAATGGGGGGTTTAGAAACCACGGTTTTAGTTAAGTCAGGACGTTGAAAAAAAA TTTAGTCAAGCGGGG AGTTGAAAGCATTTGTGTAGTTAGCC AGGTTAAAAACTTAAGG GAGCTTTATACTGTAGT GTTTCG CAACCTTGACTGTTCCCCTGGGTATTAAGTCGAAAT                CGGTT    T  GT     AAT  A                           
                              AA  T                                                           -               A                          C                 A                 A      A                                    -----------TTTAT     AAAC --  TTTAC   -- ATTTCTTCTATTTTTTTACGTAAATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End