SE3130216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10813
  • Fragaria vesca
  • SE3130216
  • hAT
  • Frvh28
  • LG2:4441232-4441933
  • GTTGGAAT
  • AATTAGGGGTGGACT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGG                 --  GGCACCGAAAAAACCGAAACCGGTTAAAACTGCACCGAACCGACACCGAGTAACCAAAACCGAATGAAACCGAGGCAATCGGTTCCACAAAGCCGCACAAACCGAGTAGTGCGGTGTCGGTTTGCGGTTCCGTGCATCCTAAAAACCGAATAAACCGAACCGAACCGACATATATTCATTTAATTATTAATACGTAATTATATATTACGTGTCATGTTCTTATTGGTTATGAGTTACAAATAATAGGGTTCCACACACATGATTATGTTTTTAAGTGTTTATGTCTAACATAATTTCCTCTTATGTAGTCTTCCTTTTTGCAATAT
     AATTAGGGGTGGACTTT  TA                                                                                                                                                                                                                                                                                                                                      
     |||||||||||||||||  ||                                                                                                                                                                                                                                                                                                                                       
     TTGATCCCCACCTGAGC  GG                                                                                                                                                                                                                                                                                                                                      
TAAGG                 CA  GTTGCCAAGCCAAAAATCCGTGATTGGCTTTTGGCTTTGGCTTCGAAGCCAAAAGATAAAAGATCTTGGCTTTGGCTATTTTTATACATTTTTTGGCGTGAACAGCCAATTGGCTTGTAGCCAAGCCAAAGTTACGCCAAAGCCAATGTTTTGGATGATAGGCATTATAAAAAGCGTAAATTGGTTTATTGTATTTTTGATTTTTATAGTTTCAACATTTGATAATTGTGAAGTTTATTCAATGAGATTACCCAAGTTTGTTCATTAACTTTACTTTTCTTTTCGATTTCAAATATGTATTAAGTAAACTTCGCAGGTTGTAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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