Plant MITE

SE3130217

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10814
Fragaria vesca
SE3130217
hAT
Frvh29
LG6:14365510-14366082
CGGGTAAG
GCATGCCCGGACTTGA

Secondary structure and sequence

TSD TIR

5'

3'

CGGGTAA   T            TATGA      GGAGTCAGCCGACTCAAGGCCCGGAGTCATAAGGGGCCCAGAAAAAAATTAACAAGTTTTCATTAATCATCCTACAAGCACAGTGATCGAGCTCAAGTTTTGCCAAATTAAAAGAAAATACTGACATGATAGGCCTATACAAGTTCAACAAGTTATATATAATTATAGTATATTTTAAAATCTATTGAAGTAAGAAATTTGTTTTTTTGAACAAAAAGAAATTTGTTTTATAAATAGGATTTATAATGTAAA
       GCA GCCCGGACTTGA     GGCTGA                                                                                                                                                                                                                                                            
       ||| ||||||||||||     ||||||                                                                                                                                                                                                                                                            T
       CGT CGGGCCTGGACT     AGTCCG                                                                                                                                                                                                                                                            
GAATGGG   C            CTAAA      CACTCAGTTTGAGATTTTCAACCCGGGAGTTTAGTATTACACGTAAAGCACAGTAAAAAAAATAATTTACGTAAAAGAAATATTTTCAAAAAGCCCTTGATCGATTAATTGTTATTATTTGTTGTTTGTTGTACATTAAAGGCTTTTATATAAGTACATTATAGGCTTATATACATCTCTAATGGTTTGGAGAGATATAAAATCATTAAAATATAGATTTATAAGGATAAATCTATTATAAAATTATTAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130217

CGGGTAAGCATGCCCGGACTTGATATGAGGCTGAGGAGTCAGCCGACTCAAGGCCCGGAGTCATAAGGGGCCCAGAAAAAAATTAACAAGTTTTCATTAATCATCCTACAAGCACAGTGATCGAGCTCAAGTTTTGCCAAATTAAAAGAAAATACTGACATGATAGGCCTATACAAGTTCAACAAGTTATATATAATTATAGTATATTTTAAAATCTATTGAAGTAAGAAATTTGTTTTTTTGAACAAAAAGAAATTTGTTTTATAAATAGGATTTATAATGTAAATATGATTATTAAAATATTATCTAAATAGGAATATTTAGATATAAAATTACTAAAATATAGAGAGGTTTGGTAATCTCTACATATATTCGGATATTACATGAATATATTTTCGGAAATTACATGTTGTTTGTTGTTTATTATTGTTAATTAGCTAGTTCCCGAAAAACTTTTATAAAGAAAATGCATTTAATAAAAAAAATGACACGAAATGCACATTATGATTTGAGGGCCCAACTTTTAGAGTTTGACTCACGCCTGAAAATCTCAGGTCCGGGCCTGCGGGTAAG

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